Generic Gene Ontology Term Finder

Princeton University

Lewis-Sigler Institute for Integrative Genomics

GENERIC GENE ONTOLOGY (GO) TERM FINDER

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Your Input List of Genes (11)

Duplicate identifiers: 0 identifiers were duplicated in your input list

Unknown identifiers: 0 identifiers were unknown
Unknown identifiers are those found to be unannotated with the selected (and possibly filtered) association file.

Ambiguous identifiers: 0 identifiers were ambiguous
Ambiguous identifiers are those that might map to more than one database ID (annotated entity).

All other identifiers: 11 identifiers in this list
These are identifiers not found to be ambiguous, unknown, or discarded.
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Date	Fri Feb 14 15:34:21 EST 2014
Aspect	P
P-value cutoff	0.01
Calculate FDR	Yes
Regulation links followed	Yes
Bonferroni correction	Yes
Annotation file	gene_association.sgd
Evidence codes used	ISM (951), IEA (44873), IGI (3547), IEP (127), NAS (671), IBA (218), IPI (2636), ND (3841), ISO (10), IC (810), ISS (2100), ISA (228), IMP (11713), IDA (19650), RCA (1), TAS (1017)

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Your Input List of Genes

Of your input list, 11 genes are known or unknown but not ambiguous. Identifiers unknown to the annotation provider are still included in the statistics. The total number of genes used to calculate the background distribution of GO terms is 7166. Displaying 17 terms out of a total of 25 found.

Result Table

Terms from the Process Ontology of gene_association.sgd with p-value <= 0.01
Gene Ontology term Cluster frequency Genome frequency Corrected
P-value FDR False
Positives Genes annotated to the term
mitochondrial electron transport, ubiquinol to cytochrome c 11 of 11 genes, 100.0% 11 of 7166 genes, 0.2% 3.92e-34 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
ATP synthesis coupled electron transport 11 of 11 genes, 100.0% 28 of 7166 genes, 0.4% 8.43e-27 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
mitochondrial ATP synthesis coupled electron transport 11 of 11 genes, 100.0% 28 of 7166 genes, 0.4% 8.43e-27 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
oxidative phosphorylation 11 of 11 genes, 100.0% 29 of 7166 genes, 0.4% 1.35e-26 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
respiratory electron transport chain 11 of 11 genes, 100.0% 30 of 7166 genes, 0.4% 2.14e-26 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
electron transport chain 11 of 11 genes, 100.0% 31 of 7166 genes, 0.4% 3.32e-26 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
cellular respiration 11 of 11 genes, 100.0% 109 of 7166 genes, 1.5% 1.50e-19 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
energy derivation by oxidation of organic compounds 11 of 11 genes, 100.0% 157 of 7166 genes, 2.2% 9.82e-18 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
generation of precursor metabolites and energy 11 of 11 genes, 100.0% 190 of 7166 genes, 2.7% 8.53e-17 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
phosphorylation 11 of 11 genes, 100.0% 325 of 7166 genes, 4.5% 3.54e-14 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
aerobic respiration 8 of 11 genes, 72.7% 85 of 7166 genes, 1.2% 1.12e-12 0.00% 0.00 Q0105, YEL024W, S000002937, QCR2, YGR183C, YHR001W-A, COR5, S000001929
oxidation-reduction process 11 of 11 genes, 100.0% 447 of 7166 genes, 6.2% 1.23e-12 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
phosphate-containing compound metabolic process 11 of 11 genes, 100.0% 816 of 7166 genes, 11.4% 9.82e-10 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
phosphorus metabolic process 11 of 11 genes, 100.0% 841 of 7166 genes, 11.7% 1.37e-09 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
single-organism metabolic process 11 of 11 genes, 100.0% 2139 of 7166 genes, 29.8% 4.11e-05 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5
mitochondrial electron transport, cytochrome c to oxygen 2 of 11 genes, 18.2% 12 of 7166 genes, 0.2% 0.00350 0.75% 0.12 YEL039C, S000003809
single-organism cellular process 11 of 11 genes, 100.0% 3280 of 7166 genes, 45.8% 0.00457 0.71% 0.12 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5

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Your Input List of Genes

Of your input list, 11 genes are known or unknown but not ambiguous. Identifiers unknown to the annotation provider are still included in the statistics. The total number of genes used to calculate the background distribution of GO terms is 7166. Displaying 17 terms out of a total of 25 found.

Nodes in the graph are color-coded according to their p-value. Genes in the GO tree are associated with the GO term(s) to which they are directly annotated. To control the graph size, only significant hits with a p-value <= 0.01 and terms descended from them are included.