6401229/ 0002775 0000060 0002002 00000000000 12277476735 010652 5 ustar apache mark 6401229/gtfweb.out 0000664 0000060 0000060 00000001523 12277476735 013151 0 ustar apache apache auto cache file path '/Genomics/GO/data/parsed/gtfcache_P_gene_association.sgd' Getting shared lock on /Genomics/GO/data/parsed/gtfcache_P_gene_association.sgd... Elapsed time: 0 Loading cache /Genomics/GO/data/parsed/gtfcache_P_gene_association.sgd... Cache created with: totalNumGenes => 7166 ontologyFile => /Genomics/GO/./data/unparsed/gene_ontology.obo aspect => P linkRegulates => 1 annotationFile => /Genomics/GO/./data/unparsed/gene_association.sgd Evidence codes used: ISM (951), IEA (44873), IGI (3547), IEP (127), NAS (671), IBA (218), IPI (2636), ND (3841), ISO (10), IC (810), ISS (2100), ISA (228), IMP (11713), IDA (19650), RCA (1), TAS (1017) Analyzing query.txt Elapsed time: 11 Find terms from the P ontology for gene_association.sgd file ... Applying Bonferroni correction factor of 25 Elapsed time 12, finishing up Done 6401229/query_tab.txt 0000664 0000060 0002002 00000007733 12277476735 013416 0 ustar apache mark Date Fri Feb 14 15:34:21 EST 2014 Aspect P P-value cutoff 0.01 Calculate FDR Yes Regulation links followed Yes Bonferroni correction Yes Annotation file gene_association.sgd Evidence codes used ISM (951), IEA (44873), IGI (3547), IEP (127), NAS (671), IBA (218), IPI (2636), ND (3841), ISO (10), IC (810), ISS (2100), ISA (228), IMP (11713), IDA (19650), RCA (1), TAS (1017) GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 3.92993874802087e-34 1.57197549920835e-35 11 11 11 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0042773 ATP synthesis coupled electron transport 8.43922120639751e-27 3.375688482559e-28 11 11 28 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0042775 mitochondrial ATP synthesis coupled electron transport 8.43922120639751e-27 3.375688482559e-28 11 11 28 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0006119 oxidative phosphorylation 1.35965230547516e-26 5.43860922190063e-28 11 11 29 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0022904 respiratory electron transport chain 2.14681942969762e-26 8.58727771879048e-28 11 11 30 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0022900 electron transport chain 3.32757011603132e-26 1.33102804641253e-27 11 11 31 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0045333 cellular respiration 1.50794868566613e-19 6.03179474266454e-21 11 11 109 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0015980 energy derivation by oxidation of organic compounds 9.82822922255104e-18 3.93129168902042e-19 11 11 157 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0006091 generation of precursor metabolites and energy 8.53927456482112e-17 3.41570982592845e-18 11 11 190 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0016310 phosphorylation 3.54524735016825e-14 1.4180989400673e-15 11 11 325 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0009060 aerobic respiration 1.12273120750281e-12 4.49092483001125e-14 8 11 85 7166 0.00% 0.00 Q0105, YEL024W, S000002937, QCR2, YGR183C, YHR001W-A, COR5, S000001929 GO:0055114 oxidation-reduction process 1.23809153896328e-12 4.95236615585313e-14 11 11 447 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0006796 phosphate-containing compound metabolic process 9.82704947865436e-10 3.93081979146174e-11 11 11 816 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0006793 phosphorus metabolic process 1.37235016175333e-09 5.48940064701334e-11 11 11 841 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0044710 single-organism metabolic process 4.11493883602013e-05 1.64597553440805e-06 11 11 2139 7166 0.00% 0.00 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 0.00350545828643882 0.000140218331457553 2 11 12 7166 0.75% 0.12 YEL039C, S000003809 GO:0044763 single-organism cellular process 0.00457669724378555 0.000183067889751422 11 11 3280 7166 0.71% 0.12 YEL024W, YGR183C, YEL039C, S000003809, CYT1, S000001929, Q0105, QCR2, S000002937, YHR001W-A, COR5 6401229/query_results.html 0000664 0000060 0002002 00000102170 12277476735 014465 0 ustar apache mark
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Your Input List of Genes | ||||||
Of your input list, 11 genes are known or unknown but not ambiguous. Identifiers unknown to the annotation provider are still included in the statistics. The total number of genes used to calculate the background distribution of GO terms is 7166. Displaying 17 terms out of a total of 25 found. Result Table
6401229/query.txt 0000664 0000060 0000060 00000000130 12277476715 013037 0 ustar apache apache COR5 CYT1 Q0105 QCR2 S000001929 S000002937 S000003809 YEL024W YEL039C YGR183C YHR001W-A 6401229/query.png 0000664 0000060 0000060 00000040335 12277476732 013016 0 ustar apache apache PNG IHDR b PLTE } P P/O/ 3,ff 3fffff 2#k } f _Ǟ 3f̙ ϵ;2pd IDATx˒E;3qE*H@iLSH*E` 3X2e` 3X2e` 3X2e` 3X2e` 3X2e` 3X2e]3'= <<<<<<<ܕ[?c?n??>ܕܕMO2DZs`9[BfЋ??R?|(a_9[BfЍ?IS2o9֓o{ndɵ̼SfǯOz+y??3dm̠lnN2^} }Ӏ]Pe`dJB>i@@@@@@@@@@@@@@@@@@@y2ςMpia-y9( w p+>̃ɵXNR@+||z(rgQ>sũ(uAǦg< ||ϐ?Ub5@!so*Pq2'3dIJb>Hg&|Lz̝h5Hֿg|2@b(}8ǻ}HMu̢șQe3dDRђBCf1dz>Cf!"b:CfR2Eq3dn C[DgF7 Dz-t4`[27>:E\GٵR8 d4"b%a'FD D3,$yBӈ@h2Oh1ZͰ@fcɷH6M4ǂS"LI s%("4WP.n$G9[v@wc|rIiCۖWRcL,0< :vpr?Dn9!t@f#n(majo?Gǁwt@}dvN90J^=Ǐ9?6[j |